BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028E04LP1|AL428913
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig337 1465 0.0
3x_Contig520 167 5e-41
>3x_Contig337
Length = 965
Score = 1465 bits (739), Expect = 0.0
Identities = 754/759 (99%)
Strand = Plus / Minus
Query: 169 atatgccaggactagcttttctgaataataaatactcccaaaaactaatggaaacatgtt 228
|||||| |||||||| |||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 965 atatgcgaggactaggttttgtgaataataaatactccgaaaaactaatggaaacatgtt 906
Query: 229 tgtgaagtaccaaaccatgtccctttatcatgactttttctatttcaaagcctttaaagc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tgtgaagtaccaaaccatgtccctttatcatgactttttctatttcaaagcctttaaagc 846
Query: 289 cagggaaagctttaaagcaatctggcaaacaattttccattgaaatagcaaagatacgta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cagggaaagctttaaagcaatctggcaaacaattttccattgaaatagcaaagatacgta 786
Query: 349 tgttagagaagaagctgtacaaagaacgctaggcaggcgcagttagcattttggaaggct 408
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 tgtaagagaagaagctgtacaaagaacgctaggcaggcgcagttagcattttggaaggct 726
Query: 409 gtatggaagaatgagtagcattaacgaacgaccacaggacccttcgagtgcgttggagca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtatggaagaatgagtagcattaacgaacgaccacaggacccttcgagtgcgttggagca 666
Query: 469 agctacacaggatgttgcgaacttgaaatcagagttccatcatatcatggatgaaatgca 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 agctacacaggatgttgcgaacttgaaatcagagttccatcatatcatggatgaaatgca 606
Query: 529 ggtagcagataaaaccctggtgagctcaagagagcagtacctacgggaggattacgtgct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ggtagcagataaaaccctggtgagctcaagagagcagtacctacgggaggattacgtgct 546
Query: 589 tcataaacttgtgaaacagcatggttcgttgaccaaggaccctaaagagggatccattac 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tcataaacttgtgaaacagcatggttcgttgaccaaggaccctaaagagggatccattac 486
Query: 649 tgagacggtagaaaaagagatgaagcgatgcggcgatttgcaacaacagaaatgcatatt 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgagacggtagaaaaagagatgaagcgatgcggcgatttgcaacaacagaaatgcatatt 426
Query: 709 agccaatacagcattgtatctagtaacgaaacatttgagcaagatcaaggccaacatcga 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agccaatacagcattgtatctagtaacgaaacatttgagcaagatcaaggccaacatcga 366
Query: 769 gtcacttgaggaagatgggttacttgcacccttggatgatgagctttcggataagaaggc 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtcacttgaggaagatgggttacttgcacccttggatgatgagctttcggataagaaggc 306
Query: 829 tggatctgttgatttaggagctggaatcgctggccttggtaacggaacggctggatcagg 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tggatctgttgatttaggagctggaatcgctggccttggtaacggaacggctggatcagg 246
Query: 889 ttccagttctggtaggaaacggccagcctcttcatcatc 927
|||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttccagttctggtaggaaacggccagcctcttcatcatc 207
>3x_Contig520
Length = 1382
Score = 167 bits (84), Expect = 5e-41
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 gatcctcaccctcaccaatcttaatgtcgccaaatatcttgttggaaatcttgcgtagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 gatcctcaccctcaccaatcttaatgtcgccaaatatcttgttggaaatcttgcgtagaa 1358
Query: 61 taaatgaatagaacaccatggttt 84
||||||||||||||||||||||||
Sbjct: 1359 taaatgaatagaacaccatggttt 1382
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6560
Number of Sequences: 1807
Number of extensions: 6560
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 2
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)